Fragaria x ananassa FL17.68-110 Genome v1.0 Assembly & Annotation
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Overview
Publication Jin-Hee Kim, Vance M. Whitaker, Seonghee Lee. A Haplotype-Phased Genome Characterizes the Genomic Architecture and Causal Variants for RXf1 Conferring Resistance to Xanthomonas fragariae in Strawberry (F. ×ananassa) (2025) Accepted to BMC Genomics Materials and Methods 'FL17.68-110’ is a University of Florida (UF) breeding accession. The two parents of 'FL17.68-110' are 'Florida Sensation' and 'FL14.100-59'. The genome is haplotype-phased and chromosomal assigned, following the nomenclature of Florida Brilliance genome (FaFB1). Homology
Homology of the Fragaria x ananassa FL17.68-110 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
Assembly
The Fragaria x ananassa FL17.68-110 Genome v1.0 assembly files are available in FASTA format. Downloads
Gene Predictions
The Fragaria x ananassa FL17.68-110 v1.0.a1 genome gene prediction file are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotation for the Fragaria x ananassa FL17.68-110 genome v1.0 are available for download below. The Fragaria x ananassa FL17.68-110 genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Transcript Alignments
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the Fragaria x ananassa FL17.68-110 genome assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3.
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