Prunus salicina Sanyueli Whole Genome v2.0 Assembly & Annotation
Data submitted by Chaoyang Liu, South China Agricultural University, Guangzhou, China
Homology of the Prunus salicina Sanyueli Genome v2.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2018-05) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2019-01), and UniProtKB/TrEMBL (Release 2019-01) databases. The best hit reports are available for download in Excel format.
All assembly and annotation files are available for download by selecting the desired data type in the left-hand side bar. Each data type page will provide a description of the available files and links to download.
The Prunus salicina Sanyueli Genome v2.0 assembly file is available in FASTA format.
The Prunus salicina Sanyueli v2.0 genome gene prediction files are available in FASTA and GFF3 formats.
Functional annotation for the Prunus salicina Sanyueli Genome v2.0 are available for download below. The Prunus salicina Genome v2.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the Prunus salicina genome assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3 format.