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Prunus persica (peach)
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Nucleotide to Nucleotide BLAST (blastn)
Request a New BLAST
Enter
Nucleotide
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
2048MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
nucleotide
BLAST databases listed below.
Nucleotide
BLAST Databases:
SELECT a Dataset
Fragaria iinumae Genome v1.0 (FII_r1.1) scaffolds
Fragaria iinumae Genome v1.0 (FII_r1.1) transcript CDS
Fragaria iinumae genome v1.0
Fragaria iinumae genome v1.0 cds
Fragaria nilgerrensis Genome v1.0
Fragaria nilgerrensis Genome v1.0 CDs
Fragaria nilgerrensis SCBG genome v1.0
Fragaria nilgerrensis SCBG genome v1.0 transcripts
Fragaria nipponica Genome v1.0 (FNI_r1.1) scaffolds
Fragaria nipponica Genome v1.0 (FNI_r1.1) transcript CDS
Fragaria nubicola Genome v1.0 (FNU_r1.1) scaffolds
Fragaria nubicola Genome v1.0 (FNU_r1.1) transcript CDS
Fragaria nubicola SCBG genome v1.0
Fragaria nubicola SCBG genome v1.0 transcripts
Fragaria orientalis Genome v1.0 (FOR_r1.1) scaffolds
Fragaria orientalis Genome v1.0 (FOR_r1.1) transcript CDS
Fragaria_vesca_v4.0.a2 transcripts
Strawberry Genome v1.0 ab hybrid gene transcripts
Strawberry Genome v1.0 ab initio gene transcripts
Strawberry Genome v1.0 pseudomolecules
Strawberry Genome v1.0 scaffolds
Strawberry Genome v1.1 pseudomolecules
Strawberry Genome v1.1 scaffolds
Strawberry Genome v2.0.a1 pseudomolecules
Strawberry Genome v4.0.a1 chromosomes
Strawberry Genome v4.0.a1 maker standard CDS
Fragaria viridis SCBG genome v1.0
Fragaria viridis SCBG genome v1.0 transcripts
Fragaria x ananassa Camarosa Genome v1.0 Pseudomolecules (hardmasked)
Fragaria x ananassa Camarosa Genome v1.0 Pseudomolecules (unmasked)
Fragaria x ananassa Camarosa Genome v1.0.a1 Transcripts
Fragaria x ananassa Genome v1.0 (FAN_r1.1) scaffolds
Fragaria x ananassa Genome v1.0 (FAN_r1.1) transcript CDS
Fragaria x ananassa Reference Genome v1.0 (FANhybrid_r1.2) scaffolds
Fragaria x ananassa Reference Genome v1.0 (FANhybrid_r1.2) transcript CDS
Malus baccata genome v1.0
Malus baccata genome v1.0 cds
Apple Genome (GDDH13 V1.1) chromosomes
Apple Genome (GDDH13 V1.1) mRNAs
Apple Genome V1.0 contigs
Apple Genome V1.0 predicted CDS
Apple Genome V3.0 contigs
Malus x domestica HFTH1 Genome v1.0.a1 chromosomes
Malus x domestica HFTH1 Genome v1.0.a1 transcripts
Malus x domestica primary pseudo genome v1.0
Prunus armeniaca genome v1.0
Prunus armeniaca genome v1.0 cds
Prunus avium Tieton Genome v1.0
Prunus avium Tieton genome v2.0
Prunus avium Tieton genome v2.0 transcripts
Sweet cherry Genome v1.0 pseudomolecules
Sweet cherry Genome v1.0 transcripts
Prunus davidiana genome v1.0
Prunus domestica Draft Genome v1.0 CDs
Prunus domestica Draft Genome v1.0 chromosomes
Prunus dulcis Genome v2.0 chromosomes
Prunus dulcis Genome v2.0 transcripts
Prunus dulcis Lauranne genome v1.0.a1 chromosomes
Prunus dulcis Lauranne genome v1.0.a1 genes
Prunus ferganensis genome v1.0
Prunus kansuensis genome v1.0
Prunus mira genome v1.0
Peach Genome V1.0 scaffolds
Peach Genome V2.0.a1 pseudomolecules & scaffolds
Peach Genome v1.0 predicted CDS
Peach Genome v1.0 predicted transcripts
Peach Genome v2.0.a1 all transcript CDS
Peach Genome v2.0.a1 alternative transcripts
Peach Genome v2.0.a1 primary transcripts
Prunus persica Chinese Cling genome v1.0
Prunus salicina Sanyueli genome v1.0
Prunus salicina Sanyueli genome v1.0 transcripts
Prunus salicina Sanyueli genome v2.0
Prunus salicina Sanyueli genome v2.0 transcripts
Prunus salicina genome v1.0
Prunus salicina genome v1.0 transcripts
Cerasus x yedoensis Somei-Yoshino genome v1.0 cds
Cerasus x yedoensis Somei-Yoshino genome v1.0 chromosomes
Prunus yedoensis Genome v1.0 chromosomes
Prunus yedoensis Genome v1.0 transcripts
Potentilla micrantha Genome v1.0 chromosomes
Potentilla micrantha Genome v1.0 transcripts
Pyrus betulifolia genome v1.0
Pyrus betulifolia genome v1.0 cds
Pyrus bretschneideri Genome Assembly v1.1 chromosomes
Pear draft genome v1.0 hybrid transcripts
Pear draft genome v1.0 repeat masked scaffolds
Pear draft genome v1.0 scaffolds
Pyrus Communis Bartlett DH Genome v2.0 chromosomes
Pyrus Communis Bartlett DH Genome v2.0 transcripts
Pyrus Pyrifolia genome v1.0 genome
Pyrus Pyrifolia genome v1.0 transcripts
Pyrus ussuriensis x communis Zhongai 1 genome v1.0
Pyrus ussuriensis x communis Zhongai 1 genome v1.0 cds
Black raspberry Genome V1.0.a1 scaffolds
Black raspberry Genome V1.0.a1 transcripts
Black raspberry Genome V1.1 chromosomes
Rubus occidentalis Genome v3.0 chromosomes
Rubus occidentalis Genome v3.0 transcripts
Rubus ulmifolius genome v1.0 scaffolds
Rosa chinensis Genome v1.0 CDS
Rosa chinensis Genome v1.0 chromosomes
Rosa chinensis Old Blush Illumina Genome v1.0 chromosomes
Rosa chinensis Old Blush Illumina Genome v1.0.a1 CDS
Rosa chinensis Old Blush homozygous Genome v2.0 chromosomes
Rosa chinensis Old Blush homozygous Genome v2.0.a1 CDS
Rosa multiflora Draft Genome v1.0 CDS
Rosa multiflora Draft Genome v1.0 chromosomes
Rosa multiflora Draft Genome v1.0 predicted CDS
GDR Fragaria unigene V5
GDR Malus unigene V5
GDR Prunus unigene V5
GDR Pyrus unigene V5
GDR Rosa unigene V5
GDR Rosaceae unigene V5
GDR Rubus unigene V5
Fragaria ananassa GDR RefTrans V1
Malus x domestica GDR RefTrans V1
Prunus avium GDR RefTrans V1
Prunus persica GDR RefTrans V1
Rosa GDR reftransV1
Rubus GDR RefTrans V2
pyrus GDR reftransV1
Fuentes Rubus idaeus heritage sequences GDR 20180225 1145-LFV
Malus sieversii apple-FOX Arabidopsis library sequences
Rosaceae Conserved Ortholog Set
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-Value (Expected Threshold)
Expected number of chance matches in a random model. This number should be give in a decimal format.
More Information
|
Expect value video tutorial
Word size:
7
11
15
16
20
24
28
32
48
64
128
256
Max matches in a query range
Scoring parameters
Match/Mismatch Scores:
1,-2
1,-3
1,-4
2,-3
4,-5
1,-1
Gap Costs:
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 1 Extension: 1
BLAST