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Protein to Protein BLAST (blastp)
Request a New BLAST
Enter
Protein
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
2048MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
protein
BLAST databases listed below.
Protein
BLAST Databases:
SELECT a Dataset
Fragaria iinumae Genome v1.0 (FII_r1.1) peptide
Fragaria iinumae genome v1.0 proteins
Fragaria nilgerrensis Genome v1.0 proteins
Fragaria nilgerrensis SCBG genome v1.0 proteins
Fragaria nipponica Genome v1.0 (FNI_r1.1) peptide
Fragaria nubicola Genome v1.0 (FNU_r1.1) peptide
Fragaria nubicola SCBG genome v1.0 proteins
Fragaria orientalis Genome v1.0 (FOR_r1.1) peptide
Fragaria_vesca_v4.0.a2 proteins
Strawberry Genome v1.0 ab hybrid gene proteins
Strawberry Genome v1.0 ab initio gene proteins
Strawberry Genome v4.0.a1 maker standard proteins
Fragaria viridis SCBG genome v1.0 proteins
Fragaria x ananassa Camarosa Genome v1.0.a1 Proteins
Fragaria x ananassa Genome v1.0 (FAN_r1.1) peptide
Fragaria x ananassa Reference Genome v1.0 (FANhybrid_r1.2) peptide
Malus baccata genome v1.0 proteins
Apple Genome (GDDH13 V1.1) proteins
Apple Genome V1.0 predicted peptides
Malus x domestica HFTH1 Genome v1.0.a1 proteins
Prunus armeniaca genome v1.0 proteins
Prunus avium Tieton Genome v1.0 proteins
Prunus avium Tieton genome v2.0 proteins
Sweet cherry Genome v1.0 proteins
Prunus davidiana genome v1.0 proteins
Prunus domestica Draft Genome v1.0 proteins
Prunus dulcis Genome v2.0 proteins
Prunus dulcis Lauranne genome v1.0.a1 proteins
Prunus ferganensis genome v1.0 proteins
Prunus kansuensis genome v1.0 proteins
Prunus mira genome v1.0 proteins
Peach Genome v1.0 predicted peptides
Peach Genome v2.0.a1 all transcript peptide
Prunus persica Chinese Cling genome v1.0 proteins
Prunus salicina Sanyueli genome v1.0 proteins
Prunus salicina Sanyueli genome v2.0 proteins
Prunus salicina genome v1.0 proteins
Cerasus x yedoensis Somei-Yoshino genome v1.0 proteins
Prunus yedoensis Genome v1.0 proteins
Potentilla micrantha Genome v1.0 proteins
Pyrus betulifolia genome v1.0 proteins
Pyrus bretschneideri Genome Assembly v1.1 proteins
Pear draft genome v1.0 hybrid proteins
Pyrus Communis Bartlett DH Genome v2.0 proteins
Pyrus Pyrifolia genome v1.0 proteins
Pyrus ussuriensis x communis Zhongai 1 genome v1.0 proteins
Black raspberry Genome V1.0.a1 proteins
Rubus occidentalis Genome v3.0 proteins
Rosa chinensis Genome v1.0 proteins
Rosa chinensis Old Blush Illumina Genome v1.0.a1 proteins
Rosa chinensis Old Blush homozygous Genome v2.0.a1 proteins
Rosa multiflora Draft Genome v1.0 peptides
Rosa multiflora Draft Genome v1.0 predicted peptides
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-value(Expect threshold)
Word size:
3
6
Max matches in a query range
Scoring parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
BLAST