Fragaria x ananassa FL 16.33-8 Genome v1.0 Assembly & Annotation

Overview
Analysis NameFragaria x ananassa FL 16.33-8 Genome v1.0 Assembly & Annotation
MethodHifiasm (0.16.1)
Sourceillumina paired-end reads and PacBio Hifi reads
Date performed2024-06-15

Han, H., Oh, Y., Jang, Y. J., Chandra, S., Gill, U., Verma, S., Noh, Y.-H., Isobe, S., Pincot, D. D. A., Cole, G. S., Famula, R. A., Feldmann, M. J., Knapp, S. J., Whitaker, V. M., & Lee, S. (2024). Genomic architecture of the resistance to Phytophthora cactorum 2 (RPc2) locus in strawberry (Fragaria × ananassa). Manuscript submitted for publication, New Phytologist.

Assembly

The Fragaria x ananassa FL 16.33-8 Genome v1.0 assembly files are available in FASTA format.

Downloads

Chromosomes (FL 12.39-4) (FASTA file) Fxananassa_FL12.39-4_v1.fasta.gz
Chromosomes (FL 13.27-142) (FASTA file) Fxananassa_FL13.27-1421_v1.0.fasta.gz
Chromosomes (FL 12.39-4) (masked FASTA file) Fxananassa_FL12.39-4_v1.0.masked.fasta.gz
Chromosomes (FL 13.27-142) (masked FASTA file) Fxananassa_FL13.27-142_v1.masked.fasta.gz
Chromosomes (FL 12.39-4) (soft masked FASTA file) Fxananassa_FL12.39-4_v1.0.soft_masked.fasta.gz
Chromosomes (FL 13.27-142) (soft masked FASTA file) Fxananassa_FL13.27-142_v1.soft_masked.fasta.gz
Chromosomes (FL 12.39-4) (Repeat GFF3 file) Fxananassa_FL12.39-4_v1.0.repeat.gff3.gz
Chromosomes (FL 13.27-142) (Repeat GFF3 file) Fxananassa_FL13.27-142_v1.repeat.gff3.gz
Gene Predictions

The Fragaria x ananassa FL 16.33-8 v1.0.a1 genome gene prediction file are available in GFF3 and FASTA format.

Downloads

Genes (FL 12.39-4) (GFF3 file) Fxananassa_FL12.39-4_v1.0.a1.genes.gff3.gz
Genes (FL 13.27-142) (GFF3 file) Fxananassa_FL13.27-142_v1.0.a1.genes.gff3.gz
Protein sequences (FL 12.39-4) (FASTA file) Fxananassa_FL12.39-4_v1.0.a1.protein.fasta..gz
Protein sequences (FL 13.27-142) (FASTA file) Fxananassa_FL13.27-142_v1.0.a1.protein.fasta..gz
Transcript sequences (FL 12.39-4) (FASTA file) Fxananassa_FL12.39-4_v1.0.a1.transcript.fasta..gz
Transcript sequences (FL 13.27-142) (FASTA file) Fxananassa_FL13.27-142_v1.0.a1.transcript.fasta..gz
Gene sequences (FL 12.39-4) (FASTA file) Fxananassa_FL12.39-4_v1.0.a1.gene.fasta..gz
Gene sequences (FL 13.27-142) (FASTA file) Fxananassa_FL13.27-142_v1.0.a1.gene.fasta..gz