Prunus armeniaca Genome v1.0 Assembly & Annotation
Additional information about this analysis:
The Prunus armeniaca L.( Genome v1.0 assembly file is available in FASTA format.
The Prunus armeniaca L. v1.0 genome gene prediction files are available in FASTA and GFF3 formats.
All assembly and annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar. Each data type page will provide a description of the available files and links to download. Alternatively, you can browse all available files on the FTP repository.
Homology of the Prunus armeniaca genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2018-05) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2019-01), and UniProtKB/TrEMBL (Release 2019-01) databases. The best hit reports are available for download in Excel format.
Functional annotation for the Prunus armeniaca genome v1.0 are available for download below. The Prunus armeniaca genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the Prunus armeniaca genome assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3 format.