Malus x domestica Golden Delicious FEM v1.0
Overview
Publication To be submitted (data submitted by Luca Bianco, FEM Research and Innovation Center, Italy) Methods PacBio HiFi reads (41Gb, ~55x coverage) have been assembled together with Omni-C reads using hifiasm assembler v.0.19.0 (Cheng, et al., Nature Methods, 2021). The resulting contigs were scaffolded into chromosomes using a dense integrated genetic map (Di Pierro et al., Hortic. Research, 2016). Phasing was checked with a set of ~10K Golden Delicious phased SNPs coming from the Infinium Apple 20K array (Bianco et. al., PLoSOne, 2016). Assembly
The Malus x domestica Golden Delicious FEM Genome v1.0 assembly files are available in FASTA format. Downloads
Gene Predictions
The Malus x domestica Golden Delicious FEM Genome v1.0 gene prediction file are available in GFF3 and FASTA format. Downloads
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