3'UTR SNPs for Prunus avium (sweet cherry)

Analysis Name3'UTR SNPs for Prunus avium (sweet cherry)
MethodLasergene 7's SeqMan
Source454 FLX reads from tissue samples
Date performed2012-01-12

Using RNA-seq data from cherry cultivars SNPs were identifeid in 3'UTR regions of transcripts and then mapped to the peach genome. Those alignments (and all 3'UTR Cherry SNPs) are provided below in Excel and GFF formats

T Koepke, S Schaeffer, V Krishnan, D Jiwan, A Harper, M Whiting, N Oraguzie and A Dhingra. 2012 Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3′UTR sequencing. BMC Genomics 13: 18.