RC3G0410200, mRNA:RC3G0410200 () Rosa chinensis

Transcript Overview
NameRC3G0410200
Unique NamemRNA:RC3G0410200
TypemRNA
OrganismRosa chinensis ()
Sequence length497
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:46141974..46143771 -Rosa chinensis Whole Genome v1.0 Assembly & Annotationn/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pprcL303Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)Prunus persica
mdrcL172Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
mdrcL596Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
rcroR206Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
rcrchR280Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
pbrrcL0338Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1Pyrus x bretschneideri
pbrrcL0355Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1Pyrus x bretschneideri
pbrrcL0895Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1Pyrus x bretschneideri
aprcL018Prunus armeniaca Genome v1.0 Assembly & AnnotationPrunus armeniaca
fnircL329Fragaria nilgerrensis SCBG Genome v1.0 Assembly & AnnotationFragaria nilgerrensis
ptrcL325Prunus avium Tieton Genome v2.0 Assembly & AnnotationPrunus avium
rcrugR201Rosa rugosa Whole Genome v1.0 Assembly & AnnotationRosa rugosa
fatrcL0810Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa
fatrcL0815Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa
fatrcL0909Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa
fatrcL1009Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa
fatrcL1123Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa

Orthologs
Gene/TranscriptAssemblySpecies
rna48300-v1.1-pbrPyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1Pyrus x bretschneideri
PARG03233m01Prunus armeniaca Genome v1.0 Assembly & AnnotationPrunus armeniaca
Ro06_G09191Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
FUN_023069-T1Prunus avium Tieton Genome v2.0 Assembly & AnnotationPrunus avium
FxaC_22g71591.t1Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)Fragaria x ananassa
MD04G1240900Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
MD12G1257800Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
evm.model.ctg1.84Fragaria nilgerrensis SCBG Genome v1.0 Assembly & AnnotationFragaria nilgerrensis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
RcHm_v2.0_Chr3g0448311Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RC3G0410200gene:RC3G0410200Rosa chinensisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
mRNA:RC3G0410200mRNA:RC3G0410200Rosa chinensispolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
mRNA:RC3G0410200-exon-Chr03-1551288401:46141974..46142055mRNA:RC3G0410200-exon-Chr03-1551288401:46141974..46142055Rosa chinensisexon
mRNA:RC3G0410200-exon-Chr03-1551288401:46142138..46142267mRNA:RC3G0410200-exon-Chr03-1551288401:46142138..46142267Rosa chinensisexon
mRNA:RC3G0410200-exon-Chr03-1551288401:46143487..46143771mRNA:RC3G0410200-exon-Chr03-1551288401:46143487..46143771Rosa chinensisexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
mRNA:RC3G0410200-three_prime_UTR-Chr03-1551288401:46141974..46142035mRNA:RC3G0410200-three_prime_UTR-Chr03-1551288401:46141974..46142035Rosa chinensisthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
mRNA:RC3G0410200-CDS-Chr03-1551288401:46142036..46142055mRNA:RC3G0410200-CDS-Chr03-1551288401:46142036..46142055Rosa chinensisCDS
mRNA:RC3G0410200-CDS-Chr03-1551288401:46142138..46142267mRNA:RC3G0410200-CDS-Chr03-1551288401:46142138..46142267Rosa chinensisCDS
mRNA:RC3G0410200-CDS-Chr03-1551288401:46143487..46143612mRNA:RC3G0410200-CDS-Chr03-1551288401:46143487..46143612Rosa chinensisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
mRNA:RC3G0410200-five_prime_UTR-Chr03-1551288401:46143613..46143771mRNA:RC3G0410200-five_prime_UTR-Chr03-1551288401:46143613..46143771Rosa chinensisfive_prime_UTR


Homology
[Close]
BLAST of RC3G0410200 vs. TAIR10
Match: AT4G30390.1 (| Symbols: | unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14862224-14862906 REVERSE LENGTH=95)

HSP 1 Score: 80.8777 bits (198), Expect = 1.594e-21
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLF +TL AGKLNE+VL+LF+A+G +EVLS+I+AL I+   SP+LPTRC EKF
Sbjct:   32 HIVLDLFARTLEAGKLNERVLRLFMASGNEEVLSVIDALKIKINVSPILPTRCDEKF 88
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: W9S6V5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015099 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.248e-24
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFLKTL AGKLNEKVLKLFIATGKDEVL+LI +LNIR I  PVLPTRCSE+F
Sbjct:   31 HILLDLFLKTLRAGKLNEKVLKLFIATGKDEVLALIRSLNIRPIVDPVLPTRCSERF 87
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A0S3RSK4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G071100 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.787e-24
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVL+LFIATGKDEV+SL+EALNIR + +PVLPTRCSEKF
Sbjct:   33 HILLDLFLRILRAGKLTEKVLRLFIATGKDEVISLVEALNIRHVLTPVLPTRCSEKF 89
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A1S3TVH9_VIGRR (uncharacterized protein LOC106759228 isoform X1 OS=Vigna radiata var. radiata GN=LOC106759228 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.787e-24
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVL+LFIATGKDEV+SL+EALNIR + +PVLPTRCSEKF
Sbjct:   33 HILLDLFLRILRAGKLTEKVLRLFIATGKDEVISLVEALNIRHVLTPVLPTRCSEKF 89
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A1Q3CBL4_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis GN=CFOL_v3_21096 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.128e-23
Identity = 67/89 (75.28%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    7 ECMRTPXXXXXXXXXXXXXXXXXXXXXXXXXXHIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            E MRTPPSLLSL+I++A+LN+S +SDLSPLPDHI+ DLFL+TL AGKL EK+LKLFIATGKDEVLS I+A+NI+ + +PVLPTRCSEKF
Sbjct:    1 EWMRTPPSLLSLAIETAVLNLSHVSDLSPLPDHILLDLFLRTLRAGKLTEKILKLFIATGKDEVLSFIQAMNIQHVLTPVLPTRCSEKF 89
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A1S2XQ78_CICAR (uncharacterized protein LOC101501777 OS=Cicer arietinum GN=LOC101501777 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.225e-23
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVLKLFIATGKDEV+SL++ALNI+ I +PVLPTRCSEKF
Sbjct:   31 HILLDLFLRILKAGKLTEKVLKLFIATGKDEVISLVQALNIQHIVTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: B9IQ02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07870g PE=4 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.110e-23
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HII DLFL+TL AGKL EKVLKLF+ATG DEVL+ I+ALNI+ + +PVLPTRCSEKF
Sbjct:   37 HIILDLFLRTLKAGKLTEKVLKLFVATGNDEVLAFIQALNIQHVITPVLPTRCSEKF 93
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A1U8LNJ0_GOSHI (uncharacterized protein LOC107928347 isoform X2 OS=Gossypium hirsutum GN=LOC107928347 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.269e-23
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+TL AGKL E+VLKLFI TGKDEV SLI+ALNIR   +PVLPTRCSEKF
Sbjct:   31 HIVIDLFLRTLRAGKLTERVLKLFIDTGKDEVFSLIQALNIRVTLTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A0A1S3X5W3_TOBAC (uncharacterized protein LOC107761584 isoform X2 OS=Nicotiana tabacum GN=LOC107761584 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.732e-22
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+TL AGKLNEK+LKLFIATGK+E+LSLI+A NI+ + +PVLPTRCSEKF
Sbjct:   32 HILLDLFLRTLRAGKLNEKILKLFIATGKEEILSLIDAFNIQCVLTPVLPTRCSEKF 88
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: A2Q1P9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC148994g36v2 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.444e-22
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVLKLFIATG +EV+SL++ALNIR I +PVLPTRCSEKF
Sbjct:   31 HILLDLFLRILKAGKLTEKVLKLFIATGNEEVISLVQALNIRHIVTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. ExPASy TrEMBL
Match: I3SCZ3_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.871e-22
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVLKLF+ATG +EV+SL++ALNIR I +PVLPTRCSEKF
Sbjct:   31 HILLDLFLRILKAGKLTEKVLKLFVATGNEEVISLVQALNIRHIVTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|694439963|ref|XP_009346828.1| (PREDICTED: uncharacterized protein LOC103938536 [Pyrus x bretschneideri])

HSP 1 Score: 98.9821 bits (245), Expect = 2.591e-25
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFLKTL AGKLNEKVL LF+ATGKDEVLSLI++LNIRQ  +PVLPTRCSEKF
Sbjct:   31 HILLDLFLKTLRAGKLNEKVLNLFVATGKDEVLSLIQSLNIRQTLTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|470132540|ref|XP_004302138.1| (PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 106.686 bits (265), Expect = 3.098e-25
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:   13 MRTPXXXXXXXXXXXXXXXXXXXXXXXXXXHIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSE 267
            MRTPPSLLSLSIDSALLNI++ISDLSPLPDHI+CDLFLKTLSAGKLNEKVLKLFIATGKDE+LSLIEALNIRQIHSPVLPT+ S+
Sbjct:    1 MRTPPSLLSLSIDSALLNIATISDLSPLPDHILCDLFLKTLSAGKLNEKVLKLFIATGKDEILSLIEALNIRQIHSPVLPTKSSK 85
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|703154834|ref|XP_010111045.1| (hypothetical protein L484_015099 [Morus notabilis] >gi|587943387|gb|EXC29907.1| hypothetical protein L484_015099 [Morus notabilis])

HSP 1 Score: 97.0561 bits (240), Expect = 1.821e-24
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFLKTL AGKLNEKVLKLFIATGKDEVL+LI +LNIR I  PVLPTRCSE+F
Sbjct:   31 HILLDLFLKTLRAGKLNEKVLKLFIATGKDEVLALIRSLNIRPIVDPVLPTRCSERF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|1000981250|ref|XP_002512611.2| (PREDICTED: uncharacterized protein LOC8274993 [Ricinus communis])

HSP 1 Score: 95.9005 bits (237), Expect = 4.773e-24
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFLKTL AGKLNEKVLKLF+ATGKDEVL+ I+ALNI+ + +PVLPTRCSEKF
Sbjct:   31 HILLDLFLKTLKAGKLNEKVLKLFMATGKDEVLTFIQALNIQHVLTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|802754858|ref|XP_012088781.1| (uncharacterized protein LOC105647348 [Jatropha curcas])

HSP 1 Score: 95.1301 bits (235), Expect = 8.813e-24
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLF +TL AGKLNEKVLKLF+ATGKDEVLS+IEALNI+ + +PVLPTRCSEKF
Sbjct:   31 HILLDLFARTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|950960982|ref|XP_014497781.1| (PREDICTED: uncharacterized protein LOC106759228 isoform X1 [Vigna radiata var. radiata] >gi|1044564265|ref|XP_017418406.1| PREDICTED: uncharacterized protein LOC108328979 isoform X2 [Vigna angularis] >gi|965668941|dbj|BAT83548.1| hypothetical protein VIGAN_04071100 [Vigna angularis var. angularis])

HSP 1 Score: 94.7449 bits (234), Expect = 1.428e-23
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVL+LFIATGKDEV+SL+EALNIR + +PVLPTRCSEKF
Sbjct:   33 HILLDLFLRILRAGKLTEKVLRLFIATGKDEVISLVEALNIRHVLTPVLPTRCSEKF 89
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|1130841249|dbj|GAV77625.1| (hypothetical protein CFOL_v3_21096, partial [Cephalotus follicularis])

HSP 1 Score: 94.7449 bits (234), Expect = 1.647e-23
Identity = 67/89 (75.28%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    7 ECMRTPXXXXXXXXXXXXXXXXXXXXXXXXXXHIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            E MRTPPSLLSL+I++A+LN+S +SDLSPLPDHI+ DLFL+TL AGKL EK+LKLFIATGKDEVLS I+A+NI+ + +PVLPTRCSEKF
Sbjct:    1 EWMRTPPSLLSLAIETAVLNLSHVSDLSPLPDHILLDLFLRTLRAGKLTEKILKLFIATGKDEVLSFIQAMNIQHVLTPVLPTRCSEKF 89
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|645222988|ref|XP_008218417.1| (PREDICTED: uncharacterized protein LOC103318760 [Prunus mume] >gi|1162562834|ref|XP_020421192.1| uncharacterized protein LOC109949572 [Prunus persica])

HSP 1 Score: 94.3597 bits (233), Expect = 2.211e-23
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFLKTL AGKLNEKVLKLF ATGKDE+LSLI+ALNIR   +PV PTRCSE+F
Sbjct:   31 HILIDLFLKTLRAGKLNEKVLKLFKATGKDEILSLIQALNIRHTLTPVFPTRCSERF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|1035912891|gb|OAY42485.1| (hypothetical protein MANES_09G183800 [Manihot esculenta])

HSP 1 Score: 93.5893 bits (231), Expect = 3.579e-23
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+TL AGKLNEKVL LF+ATGKDE+LS+I+ALNI+ + +PVLPTRCSEKF
Sbjct:   31 HILLDLFLRTLKAGKLNEKVLNLFMATGKDEILSVIQALNIQHVLTPVLPTRCSEKF 87
[Close]
BLAST of RC3G0410200 vs. NCBI nr
Match: gi|828299304|ref|XP_004492819.2| (PREDICTED: uncharacterized protein LOC101501777 [Cicer arietinum])

HSP 1 Score: 93.2041 bits (230), Expect = 4.706e-23
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  103 HIICDLFLKTLSAGKLNEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF 273
            HI+ DLFL+ L AGKL EKVLKLFIATGKDEV+SL++ALNI+ I +PVLPTRCSEKF
Sbjct:   31 HILLDLFLRILKAGKLTEKVLKLFIATGKDEVISLVQALNIQHIVTPVLPTRCSEKF 87
The following BLAST results are available for this feature:
BLAST of RC3G0410200 vs. TAIR10
Analysis Date: 2018-02-22 (BLASTx of Rosa chinensis v1.0 transcripts vs TAIR10)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G30390.11.594e-2164.91| Symbols: | unknown protein; Has 22 Blast hits t... [more]
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BLAST of RC3G0410200 vs. ExPASy Swiss-Prot
Analysis Date: 2018-02-21 (BLASTx of Rosa chinensis v1.0 transcripts vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RC3G0410200 vs. ExPASy TrEMBL
Analysis Date: 2018-02-27 (BLASTx of Rosa chinensis v1.0 transcripts vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
W9S6V5_9ROSA1.248e-2482.46Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A0S3RSK4_PHAAN9.787e-2477.19Uncharacterized protein OS=Vigna angularis var. an... [more]
A0A1S3TVH9_VIGRR9.787e-2477.19uncharacterized protein LOC106759228 isoform X1 OS... [more]
A0A1Q3CBL4_CEPFO1.128e-2375.28Uncharacterized protein (Fragment) OS=Cephalotus f... [more]
A0A1S2XQ78_CICAR3.225e-2377.19uncharacterized protein LOC101501777 OS=Cicer arie... [more]
B9IQ02_POPTR7.110e-2375.44Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A1U8LNJ0_GOSHI8.269e-2377.19uncharacterized protein LOC107928347 isoform X2 OS... [more]
A0A1S3X5W3_TOBAC1.732e-2275.44uncharacterized protein LOC107761584 isoform X2 OS... [more]
A2Q1P9_MEDTR2.444e-2275.44Uncharacterized protein OS=Medicago truncatula GN=... [more]
I3SCZ3_MEDTR3.871e-2273.68Uncharacterized protein OS=Medicago truncatula PE=... [more]
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BLAST of RC3G0410200 vs. NCBI nr
Analysis Date: 2018-02-28 (BLASTx of Rosa chinensis v1.0 transcripts vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|694439963|ref|XP_009346828.1|2.591e-2582.46PREDICTED: uncharacterized protein LOC103938536 [P... [more]
gi|470132540|ref|XP_004302138.1|3.098e-2591.76PREDICTED: probable UDP-arabinopyranose mutase 5 i... [more]
gi|703154834|ref|XP_010111045.1|1.821e-2482.46hypothetical protein L484_015099 [Morus notabilis]... [more]
gi|1000981250|ref|XP_002512611.2|4.773e-2478.95PREDICTED: uncharacterized protein LOC8274993 [Ric... [more]
gi|802754858|ref|XP_012088781.1|8.813e-2478.95uncharacterized protein LOC105647348 [Jatropha cur... [more]
gi|950960982|ref|XP_014497781.1|1.428e-2377.19PREDICTED: uncharacterized protein LOC106759228 is... [more]
gi|1130841249|dbj|GAV77625.1|1.647e-2375.28hypothetical protein CFOL_v3_21096, partial [Cepha... [more]
gi|645222988|ref|XP_008218417.1|2.211e-2378.95PREDICTED: uncharacterized protein LOC103318760 [P... [more]
gi|1035912891|gb|OAY42485.1|3.579e-2375.44hypothetical protein MANES_09G183800 [Manihot escu... [more]
gi|828299304|ref|XP_004492819.2|4.706e-2377.19PREDICTED: uncharacterized protein LOC101501777 [C... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA:RC3G0410200 ID=mRNA:RC3G0410200; Name=RC3G0410200; organism=Rosa chinensis; type=mRNA; length=497bp
CACAGTCAGAAATCTCGAAAACCAAGTGACAGCGGATCTGCTTCTGTTTC
TCACACGTTGGACGAATTCTTCTCCTTACCTTGTTAGTTGGTTTTGTTAG
AGAGAGGAGAGAGAGAGAGAGAGAATGATTTTTATTTATGCTTTTGGAGA
AGTCTTTATATGAATGAGTGTATGAGAACTCCGCCTTCTCTGCTATCTCT
ATCTATTGACTCAGCTCTCCTCAACATCTCCAGTATCTCCGATCTCTCTC
CTCTCCCTGACCACATAATCTGCGATCTCTTCTTGAAAACTTTGAGTGCT
GGAAAGCTGAATGAGAAAGTCTTGAAGCTATTCATAGCAACTGGCAAGGA
TGAAGTCCTTTCACTAATTGAGGCACTTAATATTCGGCAGATCCATAGTC
CTGTCCTTCCTACCAGATGTTCTGAAAAGTTCTGAGATCGTGTGTAATTG
TGTACGCACTGTATACATTTTGAAGCGAAAGGTCAAATAACTACAAA
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protein sequence of mRNA:RC3G0410200

>mRNA:RC3G0410200 ID=mRNA:RC3G0410200; Name=mRNA:RC3G0410200; organism=Rosa chinensis; type=polypeptide; length=91bp
MNECMRTPPSLLSLSIDSALLNISSISDLSPLPDHIICDLFLKTLSAGKL
NEKVLKLFIATGKDEVLSLIEALNIRQIHSPVLPTRCSEKF
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mRNA from alignment at Chr03:46141974..46143771-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA:RC3G0410200 ID=mRNA:RC3G0410200; Name=RC3G0410200; organism=Rosa chinensis; type=mRNA; length=1798bp; location=Sequence derived from: Chr03:46141974..46143771- (Rosa chinensis
CACAGTCAGAAATCTCGAAAACCAAGTGACAGCGGATCTGCTTCTGTTTC
TCACACGTTGGACGAATTCTTCTCCTTACCTTGTTAGTTGGTTTTGTTAG
AGAGAGGAGAGAGAGAGAGAGAGAATGATTTTTATTTATGCTTTTGGAGA
AGTCTTTATATGAATGAGTGTATGAGAACTCCGCCTTCTCTGCTATCTCT
ATCTATTGACTCAGCTCTCCTCAACATCTCCAGTATCTCCGATCTCTCTC
CTCTCCCTGACCACATAATCTGCGATCTCTTCTTGGTACTGTTCTCTCTT
TTTGCTTCACTGATCTAGTCACTTTTTCATTCAGTGTTTTTGGTTTGAGG
TGTGAAATATGGATTGCTTTATGGTTTTGGGTCAATGGGCAGGCTTGATC
CGGTGAGATATGAACTGGGTTTGTGTAAAGTTAGAATCTTTCATGGTATG
GTTAAGTGTGTGGTGCTAATCATAGTTTGCTTCATTAAGTGCATTTGGTT
TGAGACTTTGAGATGTGAAACAATGGATTTCCTGTCTGTTTTTAGGTAGT
TTGCAAGTTTAATCTGGTGAGATATGAACTGGGTTTGCTTAAAGTTTGAA
TCTTTCATCTTAATCAATGCTGGTTAAGTATGCGCTGCTCATTAGATTGC
TTGCTTCATTCATCAAGTGCTTTTGGTTTGAGGTGTGAAGTAATGGATTT
GTTTCTGTATTTGGGGAATTTGGGCGAGGTTAATCTGGTGACATATGAAC
TGGGTTTGCTTAAAGTTTAAAACTTTCATGATATGGGTGCTGGTTAAGTG
TCTGCTAGTGGCAGTTGTTTGACACGCTGATTAGGGCCCTTTTGTTTTTT
AAAACCTGATTTTGTTGAAAACTTTAATGGATGCTGGTTAAGTGTATCCT
AGTGGTAGTTGTTTGACATGCTGATTCTATTGATTAATTTTGTTTGAAGA
TTTCAGCCTTTTGGATGATTTCCTTTGTGTGGTGAAAAAATGGTGAAGAT
TATTTGTAATGGTTTATAATCTTGAGTACAATTATGCTTTCTGAATCTTT
GAAGGCTAGCCCTGCATTGTTGATGATTTTGCCATGGCTATGTTGGATTG
AGCTGATCTTCTGGGGCCACATGGCTCAATTATGGGACCTAATTTCGTTT
CTTGATGAGCTAATGAAGTTCCTGAATGTGTTCCAAAGATGTGTCATTGA
AACCCTATTTACTAGAGATGGAGATTGTTTGTTTAGCACAGTGGAATTAG
GCATGCACACACACCTTTAAAAAATCATCATGATGTTATTCTGTGTTTGT
TTCTTTTTCTTATAGACCTAATGGTTTGTGTGATGAACATTCAAATAACA
GTGAAATTTCTCAAGAAACTGAAATGCAATCCTTTCATAATTTGGTGCTG
TAGTTTGATTCTACTTGTGGCTTCTGTGCTATTTTGCGTTTTGGAACATC
TGTTGAATTTTGCCATACCTTGTTTGTTGTAGTAACACTTTTTTTTCTTG
ACAGAAAACTTTGAGTGCTGGAAAGCTGAATGAGAAAGTCTTGAAGCTAT
TCATAGCAACTGGCAAGGATGAAGTCCTTTCACTAATTGAGGCACTTAAT
ATTCGGCAGATCCATAGTCCTGTCCTTCCTACCAGTAAGTTAAATTTGTA
AATTCCATTGTCCTCAGCCATCTATTTAGGTGCACTCTTCTTCTGACCTC
CTAGTGTCTTGTGCAGGATGTTCTGAAAAGTTCTGAGATCGTGTGTAATT
GTGTACGCACTGTATACATTTTGAAGCGAAAGGTCAAATAACTACAAA
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Coding sequence (CDS) from alignment at Chr03:46141974..46143771-

>mRNA:RC3G0410200 ID=mRNA:RC3G0410200; Name=RC3G0410200; organism=Rosa chinensis; type=CDS; length=276bp; location=Sequence derived from: Chr03:46141974..46143771- (Rosa chinensis
ATGAATGAGTGTATGAGAACTCCGCCTTCTCTGCTATCTCTATCTATTGA
CTCAGCTCTCCTCAACATCTCCAGTATCTCCGATCTCTCTCCTCTCCCTG
ACCACATAATCTGCGATCTCTTCTTGAAAACTTTGAGTGCTGGAAAGCTG
AATGAGAAAGTCTTGAAGCTATTCATAGCAACTGGCAAGGATGAAGTCCT
TTCACTAATTGAGGCACTTAATATTCGGCAGATCCATAGTCCTGTCCTTC
CTACCAGATGTTCTGAAAAGTTCTGA
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