Ppe-HB-qTA5a | GDR

Haplotype Block Overview

Annotated Terms

Stock Haplotype

Haplotype Block Overview

Name	Ppe-HB-qTA5a
Species	Prunus persica
Stock Haplotype	[view all 7]
Haplotype	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp05	chromosome	Pp05:557504..2028804 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	Rawandoozi ZJ, Hartmann TP, Carpenedo S, Gasic K, da Silva Linge C, Cai L, Van de Weg E, Byrne DH. Identification and characterization of QTLs for fruit quality traits in peach through a multi-family approach.. BMC genomics. 2020 Jul 29; 21(1):522.

Publications


Year	Publication
2020	Rawandoozi ZJ, Hartmann TP, Carpenedo S, Gasic K, da Silva Linge C, Cai L, Van de Weg E, Byrne DH. Identification and characterization of QTLs for fruit quality traits in peach through a multi-family approach.. BMC genomics. 2020 Jul 29; 21(1):522.

Stock Haplotype

Name	Haplotype
TX2B136	h4 h5
TXW1490_1	h4
Galaxy	h1 h2
VICTOR	h2 h4
Y426–371	h1 h2
Y434–40	h2 h3
Y435–246	h1 h2

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Ppe-HB-qTA5a	Peach-RosBREED-4K-2019	5	2.23	8.12

Projects


Project Name
Peach-fruit_quality-Rawandoozi-Haplotype-2020

Haplotypes

Marker	h1	h2	h3	h4	h5
SNP_IGA_544428	B	A	B	A	A
SNP_IGA_544495	A	B	A	B	B
SNP_IGA_544961	A	B	A	B	A
SNP_IGA_545261	A	B	B	B	B
SNP_IGA_545448	A	B	B	B	B
SNP_IGA_546094	B	A	A	A	A
SNP_IGA_546316	B	A	A	A	B
SNP_IGA_546987	A	B	B	B	B
SNP_IGA_547473	A	B	B	B	A
SNP_IGA_548512	A	B	B	B	B
SNP_IGA_548597	A	B	B	B	A
SNP_IGA_550475	B	B	B	A	B

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000193412	titratable acidity