HB-C | GDR

Haplotype Block Overview

Annotated Terms

Stock Haplotype

Haplotype Block Overview

Name	HB-C
Species	Prunus avium
Stock Haplotype	[view all 55]
Haplotype	[view all]

Publications


Year	Publication
2017	Cai L, Voorrips R, vandeWeg E, Peace C, Iezzoni A. Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes. Mol Breeding. 2017; 37:85.

Stock Haplotype

Name	Haplotype
Summit	2
Lambert	2 4
Regina	2 3
Ambrunes	2
Lapins	2 3
Stella	2 3
Sweetheart	2 3
Van	2 3
Schneiders	2
Bing	2 3
Rainier	2 3
Benton	2 4
Brooks	2
Cashmere	2
Chelan	2 4
Chinook	2 3
Cowiche	2
Gil Peck	2 4
Glacier	2
Kiona	2
Newstar	2
NY 54	2
PMR-1	2 4
Sato Nashiki	2 5
Schmidt	2 4
Selah	2
Tieton	2
Ulster	2 4
Vic	2
Windsor	2 5
JJ	2
Dzherlo	2
Olympus	2
PC 7146-16	2
Kordia	2
Cristobalina	4 5
Vittoria	2 4
Emperor Francis	2 3
Black Republican	3 5
Krupnoplodnaya	2
Early Burlat	2
Venus	2 8
Moreau	2 4
Index	2
Sunburst	2
MIM 17	5 6
MIM 23	5 7
AA	2
Bertiolle	2 4
Napoleon	2 3
BB	2 4
CC	2
DD	2
EE	2 3
GG	2

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
HB-C	Sweet Cherry-QTL-HotSpot-Chr2-2017	Chr02	24.76	28.94

Projects


Project Name
Sweet_Cherry-Cai-Haplotype-2017

Haplotypes

Marker	2	3	4	5	6	7	8
RosBREED_snp_sweet_cherry_Pp2_14255547	G	A	G	G	G	G	A
RosBREED_snp_sweet_cherry_Pp2_14725827	G	G	A	G	G	A	G
RosBREED_snp_sweet_cherry_Pp2_14926622	C	A	A	A	C	A	C
RosBREED_snp_tart_cherry_a_Pp2_13737685	A	A	A	A	G	A	A
RosBREED_snp_tart_cherry_a_Pp2_14471355	A	G	A	A	A	G	G

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:16515942..17704790.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201942	fruit size
MAIN:000192293	fruit firmness
MAIN:000192283	total water soluble content