GWAS0000765 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0000765 [ MapViewer ]
Published Symbol	RD_2012
Trait Name	fruit ripe 100%
Trait Alias	N/A
GWAS Marker	SNP_IGA_417666
GWAS Study	Peach-fruit_quality-GWAS-Linge-2021
Genome Assembly	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Statistical Mothod	FASTmrEMMA
Experimental Model	N/A
GWAS Panel	Fresh_Market_Peach_AR_SC_TX_620
LOD	12.33
P Value	4.905688861018E-14
R2	4.15
Unique key	3510-RD_2012SNP_IGA_41766613.3093FASTmrEMMA
Effect	11.9094
MAF	0.4366
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192278	fruit ripe 100%

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold_4	supercontig	scaffold_4:13081053..13081053	Prunus persica Whole Genome v1.0 Assembly & Annotation	View
Pp04	chromosome	Pp04:13091850..13091850	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	View

Publications


Year	Publication
2021	da Silva Linge Cassia, Cai Lichun, Fu Wanfang, Clark John, Worthington Margaret, Rawandoozi Zena, Byrne David H., Gasic Ksenija. Multi-Locus Genome-Wide Association Studies Reveal Fruit Quality Hotspots in Peach Genome. Frontiers in Plant Science 25 February 2021; https://doi.org/10.3389/fpls.2021.644799

Germplasm


Stock Name	Type
Fresh_Market_Peach_AR_SC_TX_620	panel