GWAS0000914 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0000914 [ MapViewer ]
Published Symbol	SSC_2010
Trait Name	total water soluble content
Trait Alias	N/A
GWAS Marker	SNP_IGA_603627
GWAS Study	Peach-fruit_quality-GWAS-Linge-2021
Genome Assembly	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Statistical Mothod	FASTmrEMMA
Experimental Model	N/A
GWAS Panel	Fresh_Market_Peach_AR_SC_TX_620
LOD	3.43
P Value	6.9951978105121E-5
R2	6.81
Unique key	3510-SSC_2010SNP_IGA_6036274.1552FASTmrEMMA
Effect	1.4973
MAF	0.3191
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192283	total water soluble content

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold_5	supercontig	scaffold_5:17202740..17202740	Prunus persica Whole Genome v1.0 Assembly & Annotation	View
Pp05	chromosome	Pp05:17197419..17197419	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	View

Publications


Year	Publication
2021	da Silva Linge Cassia, Cai Lichun, Fu Wanfang, Clark John, Worthington Margaret, Rawandoozi Zena, Byrne David H., Gasic Ksenija. Multi-Locus Genome-Wide Association Studies Reveal Fruit Quality Hotspots in Peach Genome. Frontiers in Plant Science 25 February 2021; https://doi.org/10.3389/fpls.2021.644799

Germplasm


Stock Name	Type
Fresh_Market_Peach_AR_SC_TX_620	panel