CPSCT012, CPSCT012 (genetic_marker) Prunus salicina | GDR

Marker Overview

Marker Overview


Name	CPSCT012
Genbank ID	AY426200
Type	SSR
Species	Prunus salicina
Germplasm	Santa Rosa
Source Type	genomic DNA
Repeat Motif	GA
PCR Condition	94 C 1 min, 94 C 30 sec, 62 C 30 sec, 72 C 30 sec. 35 cycles, 72 C 5min
Primer 1	CPSCT012.F primer: ACGGGAGACTTTCCCAGAAG
Primer 2	CPSCT012.Forward Primer: ACGGGAGACTTTCCCAGAAG
Primer 3	CPSCT012.R primer: CTTCTCGTTTCCTCCCTCCT
Primer 4	CPSCT012.Reverse Primer: CTTCTCGTTTCCTCCCTCCT
Product Length	156
Publication	[view all]
Contact	P. Arus Maria Badenes

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_6	supercontig	scaffold_6:16098467..16098872 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp06	chromosome	Pp06:17964733..17965138 +	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2004	Molecular Ecology Notes 4:163-166
2004	Mnejja M, Garcia-Mas J, Howad W, Badenes M, Arus P. Simple-sequece repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond. Molecular ecology notes. 2004; 4(2):163-166.

Germplasm


Stock Name	Type
Santa Rosa	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Almond-NL-F1-2010	G6	N/A	28.52	CPSCT012	View
2	Prunus-TE-F2	G6	N/A	36.2	CPSCT012	View
3	Almond-VB-F1	G6	N/A	18	CPSCT012	View
4	Prunus-P2175xGN22-BC1	G6	N/A	55.3	CPSCT012	View
5	Prunus-TE-F2-2015	6	N/A	37.7	CPSCT012	View
6	Peach-DvsS-BC2	LG6	N/A	30	CPSCT012	View
7	Prunus-TE-BC1-T1E	G6_T1E	N/A	17	CPSCT012	View
8	Prunus-TxE-peachV2.0	LG6	N/A	36.2	CPSCT012	View
9	Peach-CA-BC1-2017	LG6	N/A	42.8	CPSCT012	View
10	Chokecherry-RCxSC-F1-2014	RC VIa	N/A	37.5	CPSCT012-2	View
11	Chokecherry-RCxSC-F1-2017	Cho-6	N/A	78.52	CPSCT012-2	View
12	Peach_Consensus_map_2018	6	N/A	32.16	CPSCT012	View