EMFvi179 (genetic_marker) Fragaria viridis

Marker Overview
NameEMFvi179
Genbank IDAJ564353
TypeSSR
SpeciesFragaria viridis
GermplasmEMR-903
Source Typegenomic clone
Repeat MotifAG
PCR ConditionFinal reaction volume of 12.5ul comprising 1.5ul template DNA, 1x PCR buffer, 1.5mM Mg2+, 200 M dNTPs, 0.2uM each primer and 0.25U Taq polymerase. PCR cycles: initial denaturation step of 94oC (2min), then 10 cycles of 94oC (30s), 55-50oC annealing temperature decreasing by 0.5oC per cycle (45s) and 72oC (1min), followed by 25 cycles of 94oC (30s), 50oC (45s) and 72oC (1min), and a final elongation step of 72oC (5min)
Primer 1EMFvi179.EMFvi179F: GGGAATCAAATCTGAAATGAGC
Primer 2EMFvi179.EMFvi179R: GGATCCAATTTAAATGCTGGTT
Publication[view all]
ContactD. Sargent
Contact
NameDetails
D. Sargent
First name:Dan
Last name:Sargent
Institution:East Malling Research
Address:New Road, East Malling, Kent ME19 6BJ, UK
Email:dan.sargent@emr.ac.uk
Phone:+44 1732 523747
Germplasm
Stock NameType
EMR-903accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Fragaria-FVxFN-F2-2010FG5N/A60.31EMFvi179View
2Strawberry-High_Density_SSR_Map-F15AN/A87.79EMFvi179View
3Strawberry-Reikou-S15AN/A105.62EMFvi179View
Sequence
>EMFvi179 ID=EMFvi179; Name=EMFvi179; organism=Fragaria viridis; type=genetic_marker; length=194bp
GGGAATCAAATCTGAAATGAGCCCTTTTTTCTAAATTTTATATAACATTA
GCTAATAGCAGTAGCACAGACTAGTTTGATCAGTTTGGATCGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGTTGATGATAACCAGCATTTAAATTGGATCC