MD201a, MD201a (genetic_marker) Prunus persica | GDR

Marker Overview

Marker Overview


Name	MD201a
Genbank ID	AF414988
Type	SSR
Species	Prunus persica
Source Type	gene
Repeat Motif	(CT)21
PCR Condition	94 C 5 min, 94 C 1 min, 55 C 1 min, 72 C 2 min. 35 cycles, 72 C 7min
Primer 1	MD201a.F primer: ATCTCTACCTTGTTCACTACCC
Primer 2	MD201a.Forward Primer: ATCTCTACCTTGTTCACTACCC
Primer 3	MD201a.R primer: TTCTCGTCCAAAAGACTAGCAG
Primer 4	MD201a.Reverse Primer: TTCTCGTCCAAAAGACTAGCAG
Product Length	247
Publication	[view all]
Contact	P. Arus Amy Iezzoni Maria Badenes

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Amy Iezzoni

First name:	Amy
Last name:	Iezzoni
Title:	Professor
Institution:	Michigan State University
Address:	A342 PSSB, East Lansing, MI 48824
Country:	USA
Email:	iezzoni@msu.edu
Phone:	517-355-5191 x1391
Keywords:	cherry breeder
Last update:	Jun 2017

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_8	supercontig	scaffold_8:10926112..10927370 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp08	chromosome	Pp08:11670612..11671870 +	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV08_REGINA	chromosome	PAV08_REGINA:13271861..13272078 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr_8	chromosome	chr_8:22879375..22879592 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
Pd08	chromosome	Pd08:8299266..8299502 .	Prunus dulcis Lauranne Genome v1.0	GDR marker alignment to genome using primer sequences

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2005	Yamamoto T, Yamaguchi M, Hayashi T. An Integrated Genetic Linkage Map of Peach by SSR, STS, AFLP and RAPD. Journal of the Japanese Society for Horticultural Science. 2005; 74(3):204-213.
2008	Olmstead JW, Sebolt AM, Cabrera A, Sooriyapathirana SS, Hammar S, Iriarte G, Wang D, Chen CY, van der Knaap E, Iezzoni AF. Construction of an intra-specific sweet cherry (Prunus avium L.) genetic linkage map and synteny analysis with the Prunus reference map. Tree Genetics and Genomes. 2008; 4(4):897-910.