SNP_IGA_106543, SNP_IGA_106543 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_106543
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_106543
IRSC 16K SNP array for peach:SNP_IGA_106543
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_106543_LEFT_primer_0: TTTCTGATGCCTTCACTTCTGA
Primer 2SNP_IGA_106543_RIGHT_primer_0: CTGGTATGGAGGAGAAAGATGG
Product Length240
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F21N/A70.4SNP_IGA_106543View
2Peach-SNP_Z-BC2LG1N/A54SNP_IGA_106543View
3Peach-PF-BC1-2017LG1N/A71SNP_IGA_106543View
4Prunus-TE-F2-20151N/A50.5SA106543View
Sequence
>SNP_IGA_106543 ID=SNP_IGA_106543; Name=SNP_IGA_106543; organism=Prunus persica; type=genetic_marker; length=121bp
CTTCACTTCTGATTTAAGATTTGCAGAAGTTGATTCCAGCAACAAGCTGC
CTGTTTCTGTRTTATGGACAGAAGCACTATCCAGATTCTGAAGAGCACCT
GATGAGGCAATCCGCTGGAGG
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:34037810..34037810. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:35011651..35011651. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)