SNP_IGA_110232, SNP_IGA_110232 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_110232
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_110232
IRSC 16K SNP array for peach:SNP_IGA_110232
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_110232_LEFT_primer_0: AACAAATTGACCCTGTCCAATC
Primer 2SNP_IGA_110232_RIGHT_primer_0: CTTGAGTTCACACCACCACATT
Product Length152
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-WB-F2-2015LG1N/A83.9SNP_IGA_110232View
2Peach-OC-F21N/A72SNP_IGA_110232View
3Peach-PF-Recurrent-2017LG1N/A48.3SNP_IGA_110232View
4Prunus-TE-F2-20151N/A54.1SA110232View
Sequence
>SNP_IGA_110232 ID=SNP_IGA_110232; Name=SNP_IGA_110232; organism=Prunus persica; type=genetic_marker; length=121bp
CAATCCCATTTCAGCTTCTTCAGGGTTATTAGTGCAAAAGGTGGCTGGAG
TTTCAAAGTTMATCCCCACAACATTGTGTTGGAAATTAGGAAATGAAGAA
CCCTGACCAAGGAAATGTGGT
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:35578084..35578084. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:36551296..36551296. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)