SNP_IGA_119215, SNP_IGA_119215 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_119215
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_119215
IRSC 16K SNP array for peach:SNP_IGA_119215
3K SeqSNP for peach:SNP_IGA_119215
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_119215_LEFT_primer_0: TGCATGAATCTATCTCTGGCAA
Primer 2SNP_IGA_119215_RIGHT_primer_0: GACCTTTCGATGTCCTTTGTTC
Product Length219
ContactKsenija Gasic
Associated WithGWAS0001491
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F21N/A85.2SNP_IGA_119215View
2Peach-VV-F2G1N/A83SNP_IGA_119215View
3Peach_CxEL_F1-physical-Prunus-persicaV1.0CxEL1N/A39573544SNP_IGA_119215View
4Prunus-TE-F2-20151N/A67SA119215View
5Peach_Consensus_map_20181N/A83.26SNP_IGA_119215View
Sequence
>SNP_IGA_119215 ID=SNP_IGA_119215; Name=SNP_IGA_119215; organism=Prunus persica; type=genetic_marker; length=121bp
ACAATATGCATGAATCTATCTCTGGCAATTTCGTTTTGTGAAATAAGTTA
AAACTCTAATYAATTAAGACAGTACAAACATGTAGAAACCAGAAAACATG
TGTCTACGAAGACATTATAGT
Annotated Terms
The following terms have been associated with this genetic_marker:
Vocabulary: Rosaceae Trait Ontology
TermDefinition
MAIN:rosaceae_trait_ontology:resistance to Monilinia fructicolaresistance to Monilinia fructicola