SNP_IGA_158824, SNP_IGA_158824 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_158824
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_158824
IRSC 16K SNP array for peach:SNP_IGA_158824
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_158824_LEFT_primer_0: AACCAAGCCTCTGAGCAATAAC
Primer 2SNP_IGA_158824_RIGHT_primer_0: AGACTGAACCCTTGGTTGGTAA
Product Length196
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F22_1N/A4.12SNP_IGA_158824View
2Peach-PF-BC1-2017LG2N/A11.2SNP_IGA_158824View
3Prunus-TE-F2-20152N/A4.8SA158824View
4Peach_Consensus_map_20182N/A7.63SNP_IGA_158824View
Sequence
>SNP_IGA_158824 ID=SNP_IGA_158824; Name=SNP_IGA_158824; organism=Prunus persica; type=genetic_marker; length=121bp
CTAATATAAAAAAGGGCTTGCAAAATAAAGCCAGGCCAACCACTGCCTTG
GCTATTCCAGRATAACATCTTCATGGATTGGGGCTAGGGGTGTTACCAAC
CAAGGGTTCAGTCTCCCTCAG
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:2238171..2238171. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:3984197..3984197. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)