SNP_IGA_207716, SNP_IGA_207716 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_207716
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_207716
IRSC 16K SNP array for peach:SNP_IGA_207716
3K SeqSNP for peach:SNP_IGA_207716
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_207716_LEFT_primer_0: TTACAATCTGCAATTCCGTGTC
Primer 2SNP_IGA_207716_RIGHT_primer_0: ATAAGCCAACAGAAACCCTTGA
Product Length102
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F22_1N/A18.68SNP_IGA_207716View
2Prunus-TE-F2-20152N/A6.2SA207716View
3Peach-ZC-F2-20182N/A35.6SNP_IGA_207716View
Sequence
>SNP_IGA_207716 ID=SNP_IGA_207716; Name=SNP_IGA_207716; organism=Prunus persica; type=genetic_marker; length=121bp
CAATTCCGTGTCATCTTTCTCAATTCCTTTCTCAAAATGTCTTGCGTACT
TCATAATGTCYGGTTGAAGCTCAAGGGTTTCTGTTGGCTTATGAGCAAAT
GAGAACTTCCAATCCTGGGGC
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:5876835..5876835. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:7621878..7621878. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)