SNP_IGA_273175, SNP_IGA_273175 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_273175
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_273175
IRSC 16K SNP array for peach:SNP_IGA_273175
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_273175_LEFT_primer_0: TCAACAAGGCTTGCAGTAGTGT
Primer 2SNP_IGA_273175_RIGHT_primer_0: CTGGCTCACTGGTCTTTCTTCT
Product Length279
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20152N/A20.1SA273175View
2Prunus-TE-BC1-T1EG2_T1EN/A18.5SA273175View
3Prunus-TE-BC1-EG2_EN/A38.4SA273175View
4Peach-PF-BC1-2017LG2N/A37.5SNP_IGA_273175View
5Peach-PF-F1-2017LG2N/A46.2SNP_IGA_273175View
6Peach_Consensus_map_20182N/A34.84SNP_IGA_273175View
Sequence
>SNP_IGA_273175 ID=SNP_IGA_273175; Name=SNP_IGA_273175; organism=Prunus persica; type=genetic_marker; length=121bp
CAGTCCCTTAGATCCAAGTGTCTTAGTTTAGGGAGCTTATTAACTGCTTC
CGGCCAATCGMAAATATTACTGAGATTGACGTCGCTTATGTCCAAATCGG
TTAAAGAAGAAAGACCAGTGA
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:18023738..18023738. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:21600017..21600017. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)