Canker-HB16

Haplotype Block Overview

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr16	chromosome	Chr16:2811437..5528033 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	Karlström A, Gómez-Cortecero A, Nellist CF, Ordidge M, Dunwell JM, Harrison RJ. Identification of novel genetic regions associated with resistance to European canker in apple.. BMC plant biology. 2022 Sep 21; 22(1):452.

Publications


Year	Publication
2022	Karlström A, Gómez-Cortecero A, Nellist CF, Ordidge M, Dunwell JM, Harrison RJ. Identification of novel genetic regions associated with resistance to European canker in apple.. BMC plant biology. 2022 Sep 21; 22(1):452.

Stock Haplotype

Name	Haplotype
Golden Delicious	hb16-shared-s

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Canker-HB16	Apple-consensus-Allard-2016	LG16	9	19

Projects


Project Name
Apple-canker-Karlstrom-Haplotype-2020

Haplotypes

Marker	hb16-aroma-r	hb16-aroma-s	hb16-gd-r	hb16-sel1-r	hb16-sel1-s	hb16-shared-s
GDsnp00719	G	A	G	G	A	A
GDsnp01116	A	G	A	A	A	G
GDsnp01588	A	C	A	A	A	C
RosBREEDSNP_SNP_AG_1617869_Lg16_01734_MAF20_248174_exon1	A	G	A	A	A	A
RosBREEDSNP_SNP_AG_3299822_Lg16_MDP0000423596_MAF40_MDP0000423596_exon3	A	A	A	A	G	A
RosBREEDSNP_SNP_CT_3461705_Lg16_00353_MAF40_166779_exon2	A	G	G	A	A	G
RosBREEDSNP_SNP_GA_3384428_Lg16_00353_MAF50_1674008_exon2	A	G	G	A	A	G
RosBREEDSNP_SNP_TC_1496083_Lg16_LAR1_MAF30_MDP0000279135_exon2	G	A	G	A	G	A
RosBREEDSNP_SNP_TC_1571002_Lg16_01734_MAF40_216397_exon1	G	A	G	A	G	A
RosBREEDSNP_SNP_TC_1669091_Lg16_01734_MAF50_193795_exon1	A	G	A	A	A	G
RosBREEDSNP_SNP_TC_3303558_Lg16	G	G	A	A	A	A
RosBREEDSNP_SNP_TC_3437104_Lg16_00353_MAF10_495480_exon1	G	A	A	G	A	A
RosBREED_SNP_TC_2419416_Lg16	A	A	G	A	A	A
SNP_FB_0334926	A	G	A	G	A	G
SNP_FB_0335238	A	G	A	A	A	G
SNP_FB_0335240	C	A	C	A	C	A
SNP_FB_0335338	A	C	A	A	A	C
SNP_FB_0335348	A	G	A	A	A	G
SNP_FB_0335349	C	A	C	C	C	A
SNP_FB_0335525	A	G	A	G	A	G
SNP_FB_0336036	A	C	A	C	A	C
SNP_FB_0336046	A	G	A	G	A	G
SNP_FB_0337022	G	G	A	G	G	G
SNP_FB_0337044	G	G	G	A	G	A
SNP_FB_0338060	G	G	G	G	A	A
SNP_FB_0338061	A	G	A	A	G	G
SNP_FB_0338082	C	A	C	A	A	A
SNP_FB_0338087	G	A	G	G	A	A
SNP_FB_0338092	C	C	C	C	C	C
SNP_FB_0338093	G	A	G	A	A	A
SNP_FB_0339052	A	G	A	A	A	G
SNP_FB_0339062	G	A	G	G	G	A
SNP_FB_0339068	A	A	A	A	A	G
SNP_FB_0339078	G	A	G	G	G	A
SNP_FB_0918148	G	G	G	G	G	G
SNP_FB_0918150	C	A	C	C	C	A
SNP_FB_1074682	G	A	G	G	G	A
SNP_FB_1074747	G	G	A	G	G	G
SNP_FB_1074767	G	G	G	G	A	A
SNP_FB_1074768	G	G	G	G	G	G
SNP_FB_1074783	A	A	A	A	G	G
SNP_FB_1074919	G	A	A	G	G	A

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:resistance to Neonectria ditissima	resistance to Neonectria ditissima