SNP_IGA_390559, SNP_IGA_390559 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_390559
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_390559
IRSC 16K SNP array for peach:SNP_IGA_390559
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_390559_LEFT_primer_0: ATGTAGCCAGAGACCCAGACAT
Primer 2SNP_IGA_390559_RIGHT_primer_0: CCAAAATCTATAGGCTCAACCG
Product Length259
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F24_1N/A16.46SNP_IGA_390559View
2Peach-V6xG-F1-V64N/A22SNP_IGA_390559View
3Peach-VV-F2G4N/A12.5SNP_IGA_390559View
4Prunus-TE-F2-20154N/A10.3SA390559View
5Peach-ZC-F2-20184N/A16.34SNP_IGA_390559View
6Peach_Consensus_map_20184N/A19.92SNP_IGA_390559View
Sequence
>SNP_IGA_390559 ID=SNP_IGA_390559; Name=SNP_IGA_390559; organism=Prunus persica; type=genetic_marker; length=121bp
TGATGGCAATAAGCTGTTCGGTGTTGAACTTTGCTTACCCCATCCTTCTT
CAAACAAACAKTCAATAAACTTTTCAAAAACTGAAATTGTCAAGGATTCA
GGTGTAAACATATCCTTGACT
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:5226293..5226293. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:5226281..5226281. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)