SNP_IGA_444204, SNP_IGA_444204 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_444204
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_444204
IRSC 16K SNP array for peach:SNP_IGA_444204
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_444204_LEFT_primer_0: CATTCCCTAAGCTCTGCTTGAT
Primer 2SNP_IGA_444204_RIGHT_primer_0: AGGTTAAGTGGCTCCCATACAA
Product Length283
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F24N/A41.2SNP_IGA_444204View
2Peach-V6xG-F1-V64N/A67SNP_IGA_444204View
3Peach-JF-F2-2016LG4N/A71.5SNP_IGA_444204View
4Peach-PF-Recurrent-2017LG4N/A40.1SNP_IGA_444204View
5Peach_Consensus_map_20184N/A57.74SNP_IGA_444204View
Sequence
>SNP_IGA_444204 ID=SNP_IGA_444204; Name=SNP_IGA_444204; organism=Prunus persica; type=genetic_marker; length=121bp
CAACCATTCCCTAAGCTCTGCTTGATTTTTTCCTTTAAGCTGCAAATCTG
TTTCCTTTGAYAAGTCTGAACCCTGATCAAGTGCACGAATCTTCCTCTCC
CATCGCGGAACATCCATTGGG
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:18861832..18861832. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:16950199..16950199. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)