SNP_IGA_449112, SNP_IGA_449112 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_449112
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_449112
IRSC 16K SNP array for peach:SNP_IGA_449112
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_449112_LEFT_primer_0: AGTCCTGCAATAAGCTCACCAT
Primer 2SNP_IGA_449112_RIGHT_primer_0: GGTGCATTTAAGCACATGTTTG
Product Length266
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F24N/A42SNP_IGA_449112View
2Peach-WB-F2-2015LG4N/A56.32SNP_IGA_449112View
3Peach-JF-F2-2016LG4N/A76.3SNP_IGA_449112View
4Peach-WB-F2LG4N/A53.7SNP_IGA_449112View
5Peach-PF-Recurrent-2017LG4N/A42.2SNP_IGA_449112View
6Prunus-TE-F2-20154N/A46.5SA449112View
7Peach_Consensus_map_20184N/A58.54SNP_IGA_449112View
Sequence
>SNP_IGA_449112 ID=SNP_IGA_449112; Name=SNP_IGA_449112; organism=Prunus persica; type=genetic_marker; length=121bp
TGCAAAGTCCTGCAATAAGCTCACCATAAGTGTTCATATTGGGAATACAA
CCATGTCCAAYCATCTTCTCAAAGAGCTCTAAAGCAATTTCAAAACCCAT
TGTCTTCCATATATCAGTAAT
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:19905501..19905501. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:17993741..17993741. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)