SNP_IGA_63833, SNP_IGA_63833 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_63833
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_63833
IRSC 16K SNP array for peach:SNP_IGA_63833
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_63833_LEFT_primer_0: CTCTTGAAAGCTCCTCGTTGTT
Primer 2SNP_IGA_63833_RIGHT_primer_0: GAAAAAGTCAAGAGCTGGCCTA
Product Length216
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G1N/A42.9SNP_IGA_63833View
2Peach-BN-F1LG1_BbN/A28.5SNP_IGA_63833View
3Peach-PF-Recurrent-2017LG1N/A25.4SNP_IGA_63833View
4Peach_Consensus_map_20181N/A40.03SNP_IGA_63833View
Sequence
>SNP_IGA_63833 ID=SNP_IGA_63833; Name=SNP_IGA_63833; organism=Prunus persica; type=genetic_marker; length=121bp
CGCTAGGAAGTACTCCTTTGTAAACAGAACCAAAACTTCCGGAACCAATC
AAATTGTCCAYAGAGAAGCCGTTAGTTGACTCAACGAGTTCCAAGTAAGA
CACTGATTTCCAACCCTTATA
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:18622159..18622159. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:19596227..19596227. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)