SNP_IGA_676100, SNP_IGA_676100 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_676100
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_676100
IRSC 16K SNP array for peach:SNP_IGA_676100
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_676100_LEFT_primer_0: TGTGACCCTCCAAAATTAAACC
Primer 2SNP_IGA_676100_RIGHT_primer_0: GGAAACCCATCATGAACTGAAT
Product Length126
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-V6xG-F1-G6N/A53.2SNP_IGA_676100View
2Prunus-MDxSD-2017LG6N/A42SNP_IGA_676100View
Sequence
>SNP_IGA_676100 ID=SNP_IGA_676100; Name=SNP_IGA_676100; organism=Prunus persica; type=genetic_marker; length=121bp
GCAGTCAAACGTGTGGATCATGTTGTCATTCTTGTGCTTAGGCCAAGCCC
TCTTCACCTCMACAAATTTATCATTCAGTTCATGATGGGTTTCCTTGGTG
ACTTCATCCACAGCCTCCTCT
Alignments
Feature NameTypeLocationAnalysis
scaffold_6 supercontig scaffold_6:20525245..20525245. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp06 chromosome Pp06:22389599..22389599. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)