SNP_IGA_717591, SNP_IGA_717591 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_717591
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_717591
IRSC 16K SNP array for peach:SNP_IGA_717591
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_717591_LEFT_primer_0: CAGTTGCAAAGCTCTGACTGAA
Primer 2SNP_IGA_717591_RIGHT_primer_0: ATCCTTCTATGGATCCAGCCTT
Product Length243
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F27N/A5.6SNP_IGA_717591View
2peach-ZC-F27N/A4.17SNP_IGA_717591View
3Peach-V6xG-F1-G7N/A2.9SNP_IGA_717591View
4Peach-WB-F2-2015LG7N/A4.53SNP_IGA_717591View
5Prunus-TE-F2-20157N/A1SA717591View
6Peach-ZC-F2-20187N/A5.39SNP_IGA_717591View
7Peach_Consensus_map_20187N/A5.12SNP_IGA_717591View
Sequence
>SNP_IGA_717591 ID=SNP_IGA_717591; Name=SNP_IGA_717591; organism=Prunus persica; type=genetic_marker; length=121bp
TCCGACAAGAACCTGGAGACTCCCCAACTTTACTATAGCAGTTGCAAAGC
TCTGACTGAAYCTCACACCATTTGATGCAAATCCAGAAACAATACCAGTC
GTAGATCTATCTGAAGCAAGC
Alignments
Feature NameTypeLocationAnalysis
scaffold_7 supercontig scaffold_7:2481079..2481079. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07 chromosome Pp07:2354039..2354039. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)