SNP_IGA_76912, SNP_IGA_76912 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_76912
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_76912
IRSC 16K SNP array for peach:SNP_IGA_76912
3K SeqSNP for peach:SNP_IGA_76912
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_76912_LEFT_primer_0: TCAAGCCAGTCAAGATTCTCAA
Primer 2SNP_IGA_76912_RIGHT_primer_0: AAATATGTGCCTGCCTACCATT
Product Length257
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20151N/A24.2SA76912View
2Peach-DvsS-BC2LG1N/A44SNP_IGA_76912View
3Peach-PF-BC1-2017LG1N/A43.6SNP_IGA_76912View
4Peach-PF-F1-2017LG1N/A53.2SNP_IGA_76912View
Sequence
>SNP_IGA_76912 ID=SNP_IGA_76912; Name=SNP_IGA_76912; organism=Prunus persica; type=genetic_marker; length=121bp
GGGTTTCAAATACAAGAGCGGGCAGTACATGTTTGTCAACTGTGCTGCGG
TTTCTCCTTTYGAATGGTAGGCAGGCACATATTTATAATCTAGTTCACAC
AGTCTTCTTCTAATCATGCCC
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:21471202..21471202. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:22445238..22445238. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)