SNP_IGA_773299, SNP_IGA_773299 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_773299
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_773299
IRSC 16K SNP array for peach:SNP_IGA_773299
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_773299_LEFT_primer_0: CAGCTCCCAAACATGTTCATAA
Primer 2SNP_IGA_773299_RIGHT_primer_0: GTTCTCTGCATTCCCTCAGACT
Product Length154
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-V6xG-F1-V67N/A43.5SNP_IGA_773299View
Sequence
>SNP_IGA_773299 ID=SNP_IGA_773299; Name=SNP_IGA_773299; organism=Prunus persica; type=genetic_marker; length=121bp
AATTCGATGTTTTCTTCGAAATTGATCCCGATGGCATCTTGAGTGTCTCT
GCTGTCGATARGTCCACTGGCCAAAACAGAGAGATCATAATCAACCGTGA
CAAACCGAAGAAGTCTGAGGG
Alignments
Feature NameTypeLocationAnalysis
scaffold_7 supercontig scaffold_7:13996333..13996333. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07 chromosome Pp07:13595075..13595075. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)