SNP_IGA_80547, SNP_IGA_80547 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_80547
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_80547
IRSC 16K SNP array for peach:SNP_IGA_80547
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_80547_LEFT_primer_0: ATCAGATGCTCAACACAAATCG
Primer 2SNP_IGA_80547_RIGHT_primer_0: AGTAAGTTTGCTCACAATGCCA
Product Length191
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-WB-F2-2015LG1N/A48.34SNP_IGA_80547View
2Peach-DvsS-BC2LG1N/A47SNP_IGA_80547View
3Peach-WB-F2LG1N/A44.5SNP_IGA_80547View
4Prunus-TE-F2-20151N/A30.9SA80547View
5Peach_Consensus_map_20181N/A45.91SNP_IGA_80547View
Sequence
>SNP_IGA_80547 ID=SNP_IGA_80547; Name=SNP_IGA_80547; organism=Prunus persica; type=genetic_marker; length=121bp
TAAGTTATGTACCTCATCATACAAGAAAGTTTTCTTTCTTTCCTCTTCCC
AACTCTTAGTRTTTGCTATTAGCAAATCCACCAAAGCTGCATTTTTGTGG
CATTGTGAGCAAACTTACTTA
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:23042260..23042260. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:24016564..24016564. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)