SNP_IGA_862321, SNP_IGA_862321 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_862321
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_862321
IRSC 16K SNP array for peach:SNP_IGA_862321
3K SeqSNP for peach:SNP_IGA_862321
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_862321_LEFT_primer_0: TTTCTCAGTTTTAGAGGCGAGG
Primer 2SNP_IGA_862321_RIGHT_primer_0: GTTCCTCTTTCAAGCTCGTCAT
Product Length116
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G8N/A20.2SNP_IGA_862321View
2Peach-WB-F2-2015LG8N/A26.65SNP_IGA_862321View
3Peach-Armking-F1G8N/A23.8SNP_IGA_862321View
4Peach_Consensus_map_20188N/A26.82SNP_IGA_862321View
Sequence
>SNP_IGA_862321 ID=SNP_IGA_862321; Name=SNP_IGA_862321; organism=Prunus persica; type=genetic_marker; length=121bp
CCATTCATGGACACACGATGTCTTTCTCAGTTTTAGAGGCGAGGATACAC
GCTACAATTTYACAGACCATTTGCATAGCAGTTTGGATCGGAAGGGGATC
AACACCTTCATGGATAATGAC
Alignments
Feature NameTypeLocationAnalysis
scaffold_8 supercontig scaffold_8:13204775..13204775. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp08 chromosome Pp08:13949281..13949281. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)