SNP_IGA_92966, SNP_IGA_92966 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_92966
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_92966
IRSC 16K SNP array for peach:SNP_IGA_92966
3K SeqSNP for peach:SNP_IGA_92966
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_92966_LEFT_primer_0: TCAGAATGGGAGATGTCAGATG
Primer 2SNP_IGA_92966_RIGHT_primer_0: GACACAGCTTCCAGCCTTTACT
Product Length111
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20151N/A40.5SA92966View
2Peach-PF-BC1-2017LG1N/A54.6SNP_IGA_92966View
3Peach-PF-F1-2017LG1N/A68.1SNP_IGA_92966View
4Peach_Consensus_map_20181N/A54.08SNP_IGA_92966View
Sequence
>SNP_IGA_92966 ID=SNP_IGA_92966; Name=SNP_IGA_92966; organism=Prunus persica; type=genetic_marker; length=121bp
CAATAAACGAAGACGGTTGGGATCTCTGATCAGAATGGGAGATGTCAGAT
GATTCTTTTAMAACCACCCCAGAGTCAGCTGCTCCAGATGGCATCTCCTG
GGGTGCTGTTGAATCGGAAGT
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:27444894..27444894. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:28419504..28419504. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)