snp_scaffold_6_25975224, snp_scaffold_6_25975224 (genetic_marker) Prunus persica

Marker Overview
Namesnp_scaffold_6_25975224
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:snp_scaffold_6_25975224
IRSC 16K SNP array for peach:snp_scaffold_6_25975224
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1snp_scaffold_6_25975224_LEFT_primer_0: GTAGGGGCATACATGAGACGTT
Primer 2snp_scaffold_6_25975224_RIGHT_primer_0: ATGTCGTGCCTTACACATATCG
Product Length143
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-WB-F2-2015LG6N/A55.99snp_scaffold_6_25975224View
2Peach_Consensus_map_20186N/A67.46snp_scaffold_6_25975224View
Sequence
>snp_scaffold_6_25975224 ID=snp_scaffold_6_25975224; Name=snp_scaffold_6_25975224; organism=Prunus persica; type=genetic_marker; length=201bp
ATAGAAATGTGAAGCTACAACAACTGGAACTATGCTAAATATTACAAAAT
ATACTATAGAATTAAATATTATCACAGAAGTAGGGGCATACATGAGACGT
YGCTTCTGGCATGAACATGCAAAAACCACATTCATGACCTAAAACTGCCA
CGCCACCAGGTTGTTGGCAGCCGGTAATATACAAGTAATCAGCATCTTGA
C
Alignments
Feature NameTypeLocationAnalysis
scaffold_6 supercontig scaffold_6:25975224..25975224. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp06 chromosome Pp06:27839827..27839827. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)