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Marker Overview
| Name | UFFxa09F09 |
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| Genbank ID | AJ870450 |
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| Type | SSR |
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| Species | Fragaria x ananassa |
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| Germplasm | Festival |
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| Source Type | EST |
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| Repeat Motif | (AAG)3,(AAG)6
Direct |
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| PCR Condition | Final reaction volume of 12.5ul comprising 1.5ul template DNA, 1x PCR buffer, 1.5mM Mg2+, 200 M dNTPs, 0.2uM each primer and 0.25U Taq polymerase. PCR cycles: initial denaturation step of 94oC (2min), then 10 cycles of 94oC (30s), 55-50oC annealing temperature decreasing by 0.5oC per cycle (45s) and 72oC (1min), followed by 25 cycles of 94oC (30s), 50oC (45s) and 72oC (1min), and a final elongation step of 72oC (5min) |
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| Primer 1 | UFFxa09F09.Forward: AGAACCATCATCGTCTCTCGTT |
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| Primer 2 | UFFxa09F09.Reverse (no gttt): GCAATCTCTTCCGGCTTAAACT |
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| Primer 3 | UFFxa09F09.UFFxa09F09F: AGAACCATCATCGTCTCTCGTT |
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| Primer 4 | UFFxa09F09.UFFxa09F09R: GCAATCTCTTCCGGCTTAAACT |
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| Publication | [view all] |
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| Contact | D. Sargent
Eric van de Weg
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Publications
| Year | Publication |
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| 2006 | Sargent DJ, Clarke J, Simpson DW, Tobutt KR, Arús P, Monfort A, Vilanova S, Denoyes-Rothan B, Rousseau M, Folta KM, Bassil NV, Battey NH. An enhanced microsatellite map of diploid Fragaria. Theoretical and Applied Genetics. 2006 May; 112(7):1349-1359. |
| 2006 | Bassil N, Gunn M, Folta K, Lewers K. Microsatellite markers for Fragaria from 'Strawberry Festival' expressed sequence tags. Molecular ecology notes. 2006; 6(2):473-476. |
Sequence
>UFFxa09F09 ID=UFFxa09F09; Name=UFFxa09F09; organism=Fragaria x ananassa; type=genetic_marker; length=218bp
AGAACCATCATCGTCTCTCGTTTTTCTAAAAGCGAAAGAAGAAGCTAAGA
AGAAGAAGAAGAAGCACCCAAAACGATGTCGTGGCAGCAGTACGTGGACG
AGCACTTGATGTGCGATATCGACGGCAACTCTCTCACCGCCGCCGCCATC
CTCGGCCAAGACGGCAGCGTCTGGTCTCAGAGCTCCAACTTCCCTCAGTT
TAAGCCGGAAGAGATTGC
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