RosBREED_snp_tart_cherry_a_Pp1_02250139, RosBREED_snp_tart_cherry_a_Pp1_02250139 (genetic_marker) Prunus cerasus

Marker Overview

Name

RosBREED_snp_tart_cherry_a_Pp1_02250139

dbSNP ID

ss490545751

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_tart_cherry_a_Pp1_02250139

Type

SNP

SNP Alleles

T/C

Species

Prunus cerasus

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_1	supercontig	scaffold_1:2250139..2250139 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp01	chromosome	Pp01:2249936..2249936 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:2313301..2313301 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus-TE-6K cherry SNP-estimate	1	N/A	3.99	RosBREED_snp_tart_cherry_a_Pp1_02250139	View
2	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	1	N/A	8.2	RosBREED_snp_tart_cherry_a_Pp1_02250139	View

Sequence

>RosBREED_snp_tart_cherry_a_Pp1_02250139 ID=RosBREED_snp_tart_cherry_a_Pp1_02250139; Name=RosBREED_snp_tart_cherry_a_Pp1_02250139; organism=Prunus cerasus; type=genetic_marker; length=207bp
ATATGTTTATTTTATGTCGTCCAGATTTTGTCAACAATACTTATCATCCA
AGTACGTGTATCGTACAAACCAGATTTCTTGACCTTCAATACAACAGACT
T[T/C]TTCCATTAGAGCTAATCAATCACAATATATATATATATATATAT
ATATATATATATATTGTGCATTCAACAAAGTTGAATGTTTCTTAAGCCGG
CAACAAT