rs159239842, rs159239842 (genetic_marker) Prunus persica

Marker Overview


Name	rs159239842
dbSNP ID	ss275388298
Type	SNP
SNP Alleles	T/A
Species	Prunus persica
Publication	[view all]
Contact	Pedro Martinez-Garcia
Comment	BOT

Contact

Name

Details

Pedro Martinez-Garcia

First name:	Pedro
Last name:	Martinez-Garcia
Title:	Researcher
Institution:	University of California
Address:	Department of Plant Sciences, University of California, One Shields Ave, Davis, CA 95616, USA
Country:	China
Email:	pjmartinezgarcia@ucdavis.edu

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_4	supercontig	scaffold_4:10940959..10940959 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
UC Davis 6K Prunus persica SNPs	2011-11-22

Publications


Year	Publication
2013	Martínez-García PJ, Parfitt DE, Ogundiwin EA, Fass J, Chan HM, Ahmad R, Lurie S, Dandekar A, Gradziel TM, Crisosto CH. High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.). Tree Genetics and Genomes. 2013; 9(1):19-36.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Peach_DGxDF_Consensus-2013	LG4	N/A	19.3	rs159239842	View
2	Peach-DF-F1-2013	LG4	N/A	29.12	rs159239842	View
3	Peach-DG-F1-2013	LG4	N/A	3.16	rs159239842	View

Sequence

>rs159239842 ID=rs159239842; Name=rs159239842; organism=Prunus persica; type=genetic_marker; length=125bp
TTCCAACTATTGCATTTCATGCTAGCGTCAACAAATCATTTGGCAAGGTA
CCTTCTGTTC[A/T]CGTTGATGCCGATCGTGTTGAATTTCATGGCAGTA
TTGATGAAATAAAAGTCTATTAAGT