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Marker Overview
| Name | RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 |
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| dbSNP ID | ss475876420 |
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| SNP Array ID | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 | | 50K SNP array for apple: | AX-105185659 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | TCAAGACGGATGTTGCCACCATTCAAAAGCTCAAG |
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| 3' Flanking Sequence | CTGGACTTGCACCCAAGCCATGAGGACAGAATTG |
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| Species | Malus x domestica |
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| Publication | [view all] |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Apple-MM-F1 | 11 | N/A | 45.2 | b475876420 | View |
| 2 | Apple-NC-F1 | 11 | N/A | 43.73 | RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 | View |
| 3 | Apple-NCZFBB-consensus | 11 | N/A | 32.48 | RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 | View |
| 4 | Apple-ZF-F1 | 11 | N/A | 38.77 | RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 | View |
Sequence
>RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1 ID=RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1; Name=RosBREEDSNP_SNP_GA_27108400_Lg13_MDP0000236565_MAF50_MDP0000236565_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TCAAGACGGATGTTGCCACCATTCAAAAGCTCAAGRCTGGACTTGCACCC
AAGCCATGAGGACAGAATTG
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