RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2, RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2
50K SNP array for apple:	AX-105209510

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

ACAGGGGGCACAGAAAGTAATCACTCGGGAAGCAG

3' Flanking Sequence

GATTTCCTCCCTAGTGTTGCACTCCACCCAGACAT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC022885.46	contig	MDC022885.46:1034..1034 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr02	chromosome	Chr02:6760967..6760967 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2 ID=RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2; Name=RosBREEDSNP_SNP_AG_6587144_Lg2_00333_MAF10_1626861_exon2; organism=Malus x domestica; type=genetic_marker; length=71bp
ACAGGGGGCACAGAAAGTAATCACTCGGGAAGCAGYGATTTCCTCCCTAG
TGTTGCACTCCACCCAGACAT