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Marker Overview
| Name | RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6 |
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| dbSNP ID | ss475876715 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115182575 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6 | | 20K SNP array for apple: | RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| Probe 1 | RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6.probe: CATCCCAAACTCCAAACAAGACTGGATATTGGGAAGGGAAAGAAAATTTC |
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| 5' Flanking Sequence | TTGATGCATGAAAACAAATAGTACAATTATTTACAAGGGCAAAGGAAACTGATACAAGCT
G |
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| 3' Flanking Sequence | GAAATTTTCTTTCCCTTCCCAATATCCAGTCTTGTTTGGAGTTTGGGATGAATTAAGCAA
A |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | apple-RGxGS-F1-2015 | LG1 | N/A | 9.7 | RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6 | View |
Sequence
>RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6 ID=RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6; Name=RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6; organism=Malus x domestica; type=genetic_marker; length=75bp
TTATTTACAAGGGCAAAGGAAACTGATACAAGCTG[A/G]GAAATTTTCT
TTCCCTTCCCAATATCCAGTCTTGT
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