RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2, RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2
50K SNP array for apple:	AX-105175242

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

CCCATGGAACAAATATTTACGATTCAAACTTAATA

3' Flanking Sequence

GAATAGTATGTTCGAACAACCTCATGATAACTAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2 ID=RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2; Name=RosBREEDSNP_SNP_TC_55394645_Lg15_01392_MAF10_MDP0000189980_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
CCCATGGAACAAATATTTACGATTCAAACTTAATAYGAATAGTATGTTCG
AACAACCTCATGATAACTAG

Alignments

Feature Name	Type	Location	Analysis
MDC010898.441	contig	MDC010898.441:2810..2810.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17	chromosome	Chr17:8606348..8606348.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation