RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1, RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-105202972
IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1
50K SNP array for apple:	AX-105202972

Type

SNP

SNP Alleles

5' Flanking Sequence

AATTAATGAGCAGACGCAGTTGCCCTTTTGTCTGA

3' Flanking Sequence

TGCTTACGATTCACCATGGAAACCTGGTTCCTTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC015166.43	contig	MDC015166.43:3566..3566 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr01	chromosome	Chr01:29987475..29987475 +	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1 ID=RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1; Name=RosBREEDSNP_SNP_TC_33651725_Lg1_01371_MAF30_328158_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AATTAATGAGCAGACGCAGTTGCCCTTTTGTCTGA[C/T]TGCTTACGAT
TCACCATGGAAACCTGGTTCCTTGT