RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1, RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1
50K SNP array for apple:	AX-105175771

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

CTGTGACTGCAACGTGCTCTCCGAGCTCCCTCCAG

3' Flanking Sequence

TTCGCTTAGCTTTCAATTGCGGCAATTGCTGTAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC012099.191	contig	MDC012099.191:10989..10989 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr01	chromosome	Chr01:30021472..30021472 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-BB-F1	1	N/A	52.4	RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1	View
2	Apple-NC-F1	1	N/A	83.48	RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1	View
3	Apple-NCZFBB-consensus	1	N/A	57.56	RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1	View

Sequence

>RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1 ID=RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1; Name=RosBREEDSNP_SNP_AC_33682524_Lg1_01371_MAF20_74867_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CTGTGACTGCAACGTGCTCTCCGAGCTCCCTCCAGMTTCGCTTAGCTTTC
AATTGCGGCAATTGCTGTAA