RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4, RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4
50K SNP array for apple:	AX-105224308

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

GTTTGTCCCTTGCAGCCTTGCAGGAGAGGGATAAA

3' Flanking Sequence

AACGCATGTTTTCAGAATTTTCTAAACTATTAAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC006895.965	contig	MDC006895.965:17317..17317 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr17	chromosome	Chr17:4221196..4221196 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4 ID=RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4; Name=RosBREEDSNP_SNP_GA_3878700_Lg17_MDP0000179859_MAF30_MDP0000179859_exon4; organism=Malus x domestica; type=genetic_marker; length=70bp
GTTTGTCCCTTGCAGCCTTGCAGGAGAGGGATAAARAACGCATGTTTTCA
GAATTTTCTAAACTATTAAA