RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1, RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1
50K SNP array for apple:	AX-105175511

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

GATTTTCCAAGAGGTCCAACCGGAAGGTTTTCCAA

3' Flanking Sequence

GGACGTAATTTGGTTGATGTTATTGGTCAGTCGT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC017608.428	contig	MDC017608.428:14800..14800 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr16	chromosome	Chr16:28810252..28810252 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1 ID=RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1; Name=RosBREEDSNP_SNP_TC_5432110_Lg12_02212_MAF50_1626966_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GATTTTCCAAGAGGTCCAACCGGAAGGTTTTCCAAYGGACGTAATTTGGT
TGATGTTATTGGTCAGTCGT