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Marker Overview
| Name | RosBREEDSNP_SNP_GA_34938858_Lg10_00258_MAF40_318882_exon1 |
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| dbSNP ID | ss475883319 |
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| SNP Array ID | | 480K SNP array for apple: | AX-105219075 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_GA_34938858_Lg10_00258_MAF40_318882_exon1 | | 50K SNP array for apple: | AX-105219075 |
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| Type | SNP |
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| SNP Alleles | R |
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| 5' Flanking Sequence | GACGGCGTTGGACTCGGTGAGCTTGGCGTGGAAGA |
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| 3' Flanking Sequence | CACTTGGAGAGGCGAGTCGAGCTTGGACTCGATA |
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| Species | Malus x domestica |
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| Publication | [view all] |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Apple-MM-F1 | 10 | N/A | 84.3 | c475883319 | View |
Sequence
>RosBREEDSNP_SNP_GA_34938858_Lg10_00258_MAF40_318882_exon1 ID=RosBREEDSNP_SNP_GA_34938858_Lg10_00258_MAF40_318882_exon1; Name=RosBREEDSNP_SNP_GA_34938858_Lg10_00258_MAF40_318882_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GACGGCGTTGGACTCGGTGAGCTTGGCGTGGAAGA[A/G]CACTTGGAGA
GGCGAGTCGAGCTTGGACTCGATAG
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