RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1, RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1
50K SNP array for apple:	AX-105224160

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

TGTCCACGACTGAATGCAGGAACAGAGCTCCCACT

3' Flanking Sequence

GTATGACTAATGCCATTGGGAGCCCGTCCTCTTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-PH-CG-2017	LG7	N/A	18.19	RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1	View

Sequence

>RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1 ID=RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1; Name=RosBREEDSNP_SNP_GT_26214607_Lg1_00674_MAF20_1633690_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TGTCCACGACTGAATGCAGGAACAGAGCTCCCACTKGTATGACTAATGCC
ATTGGGAGCCCGTCCTCTTG

Alignments

Feature Name	Type	Location	Analysis
MDC010138.105	contig	MDC010138.105:1544..1544.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01	chromosome	Chr01:24240817..24240817.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation