RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1, RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1
50K SNP array for apple:	AX-105194833

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TCCCACCCCACCCGCCAATTGGCAGAACACAATTC

3' Flanking Sequence

TACTCTCGCTTTCTTCACCTCTCCACGATCTCAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC008619.198	contig	MDC008619.198:1328..1328 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr02	chromosome	Chr02:682456..682456 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1 ID=RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1; Name=RosBREEDSNP_SNP_TC_7003348_Lg2_RosCOS1581_MAF30_409980_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TCCCACCCCACCCGCCAATTGGCAGAACACAATTCYTACTCTCGCTTTCT
TCACCTCTCCACGATCTCAA