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Marker Overview
| Name | RosBREEDSNP_SNP_AC_27455546_Lg6_RosCOS1040_MAF40_458950_exon1 |
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| dbSNP ID | ss475878695 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115182180 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_AC_27455546_Lg6_RosCOS1040_MAF40_458950_exon1 | | 50K SNP array for apple: | AX-105198860 |
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| Type | SNP |
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| SNP Alleles | M |
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| 5' Flanking Sequence | CTTCTCCGCTTGAAAGGCTTCCAGTTGACCCTCTC |
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| 3' Flanking Sequence | TTCAAAGAAATCTGCAACACCTTCCCCAACGTAC |
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| Species | Malus x domestica |
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| Publication | [view all] |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Apple-MM-F1 | 6 | N/A | 57 | b475878695 | View |
Sequence
>RosBREEDSNP_SNP_AC_27455546_Lg6_RosCOS1040_MAF40_458950_exon1 ID=RosBREEDSNP_SNP_AC_27455546_Lg6_RosCOS1040_MAF40_458950_exon1; Name=RosBREEDSNP_SNP_AC_27455546_Lg6_RosCOS1040_MAF40_458950_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
CTTCTCCGCTTGAAAGGCTTCCAGTTGACCCTCTC[A/C]TTCAAAGAAA
TCTGCAACACCTTCCCCAACGTACG
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